ECE 802: Medical Imaging

Fall 2004

 

Course Objective: The goal of this course is to explore the basic physics and mathematics of medical imaging systems and to understand some of the common clinical applications of US, CT, MRI, PET, and SPECT.

                                                                                                                                     

Instructor:

Dr. Robert McGough

Phone: 432-3333

E-mail: mcgough@egr.msu.edu

Office Hours: TTh 4:30-5pm and 6:30-7pm or by appointment

Office Location: 1213 EB

Web site: www.egr.msu.edu/~mcgough

Lecture:

TuTh 5-6:20pm in 1225 EB

Final Exam:

Monday
December 13
5:45-7:45pm.

Text:

Required Text: Introduction to Biomedical Imaging by Andrew Webb

 

Supplemental Texts (on reserve in the Engineering Library):

Medical imaging systems, Albert Macovski

Fundamentals of acoustics, Lawrence E. Kinsler and Austin R. Frey

Diagnostic ultrasound: principles and instruments, Frederick W. Kremkau.

Principles of computerized tomographic imaging, Avinash C. Kak and Malcolm Slaney.

Magnetic resonance imaging: physical principles and sequence design, E. Mark Haacke

Principles and practice of positron emission tomography, editor, Richard L. Wahl

 

Grading Policy:

Homework and Computer Projects – 60%

In-class presentation – 10%

Exam #1 – 15%

Final Exam – 15%

 

Attendance is required

Grader:

N/A

 

Prerequisites:  Graduate Standing in Engineering, Math, Physics, Chemistry or related field.  Experience with computer programming (using Matlab) is required.  Basic understanding of signal processing and Fourier transforms is expected.

 

Attendance is required

 

Homework:

Homework will be assigned each week and collected at the beginning of class the following week.

 

Textbook Errata: errata.pdf

 

 

Exam Schedule:

Exam No.

Date

Topics Covered

1

Thursday

October 29

5-6:30pm

US & CT

Final

Monday
December 13
5:45-7:45pm.

Comprehensive

 

 

 

Course Outline:

1.      US

2.      X-ray/CT

3.      Nuclear Medicine

  1. PET
  2. SPECT

4.      MRI

 

 

preliminary syllabus

 

 

generic Matlab m-files and Matlab links:

 

fix_axis.m

 

Useful Links:

 

Green’s functions links and notes on the impulse response defined for a circular US transducer:

 

Links to Green’s functions:  http://www.maths.soton.ac.uk/staff/Andersson/MA361/node46.html, http://www.boulder.nist.gov/div853/greenfn/tutorial.html, http://www.bath.ac.uk/~ensmjc/Notes/MECH0050/html/node12.html

 

notes on the impulse response (from ECE802: Acoustics, Fall 2003)

 

 

Field II US simulator, user’s guide, faq, examples:

 

http://www.es.oersted.dtu.dk/staff/jaj/field/

 

Other US links:

 

http://dukemil.egr.duke.edu/Ultrasound/index.html (Duke virtual imaging lab)

 

 

link to CT software:

 

http://www.ctsim.org/

 

other CT links:

 

online version of Kak and Slaney CT book

 

http://dukemil.egr.duke.edu/XRAY (Duke virtual imaging lab)

 

links to MRI software:

 

MR microscopy software

MRIcro software, software tutorial.

rf pulse simulator

Lyngby-Functional Neuroimaging Matlab Toolbox

educational nmr software

Matlab Software (MRITool), University of Bologna

medical image volume visualization software

NMR Image Reconstruction from Partial K-Space Data; HF in Visual C++; Software for Windows 95

V package: multidimensional signal processing for magnetic resonance

 

Other MRI links:

 

Brain Web (MRI simulator)

MRinteractive

 

http://dukemil.egr.duke.edu/MRI/ (Duke virtual imaging lab)

 

links to PET software:

 

http://hendrix.ei.dtu.dk/software/radon/code/Recon2D.tar.gz

http://hendrix.ei.dtu.dk/software/radon/code/Recon3D.tar.gz

 

Other PET links:

 

http://dukemil.egr.duke.edu/Nuclear/index.html (Duke virtual imaging lab)

 

visible human project:

 

http://www.nlm.nih.gov/research/visible/visible_human.html

 

 

Lecture notes and handouts will be placed on the Angel site as the semester progresses…

 

Homework:

hw1.pdf - updated Sept 1, 2004