Cupples, A.M. 2008. Real-time PCR Quantification of Dehalococcoides Pouplations: Methods and Applications. Journal of Microbiological Methods, 72: 1-11.
Cupples, A.M., E.S. Shaffer, J.C. Chee-Sanford and G.K. Sims. (2007). DNA Buoyant Density Shifts During 15N DNA Stable Isotope Probing, Microbiological Research, 162: 328-334.
Cupples, A.M. and G.K. Sims. 2007. Identification of In Situ 2,4-Dichlorophenoxyacetic Acid-degrading Soil Microorganisms Using DNA-stable Isotope Probing. Soil Biology and Biochemistry, 39:232-238.
Cupples, A.M., R.A. Sanford, and G.K. Sims. 2005. Dehalogenation of the Herbicides Bromoxynil (3,5-dibromo-4-hydroxybenzonitrile) and Ioxynil (3,5-Diiodino-4-Hydroxybenzonitrile) by Desulfitobacterium Chlororespirans. Applied and Environmental Microbiology, 71: 3741-3746.
Sun, W., Sun, X. and A. M. Cupples. In press. Presence, diversity and enumeration of functional genes (bssA and bamA) relating to toluene degradation across a range of redox conditions and inoculum sources. Biodegradation.
Jayamani, I. and A. M. Cupples. In press. Effect of isobutanol on toluene biodegradation in nitrate amended, sulfate amended & methanogenic enrichment microcosms. Biodegradation.