Thelusmond, J.R., Strathmann, T. J. and A. M. Cupples. In Press. The identification of carbamazepine biodegrading phylotypes and phylotypes sensitive to carbamazepine exposure in two soil microbial communities. Science of the Total Environment.
Paes Wilson F., X. Liu, T. E. Mattes, and A. M. Cupples. In Press. Nocardioides, Sediminibacterium, Aquabacterium, Variovorax and Pseudomonas linked to carbon uptake during aerobic vinyl chloride biodegradation. Environmental Science and Pollution Research.
Cupples, A. M. In Press. A review: contaminant degrading microorganisms identified using stable isotope probing. In Press. Chemical Engineering and Technology doi:10.1002/ceat.201500479.
Paes Wilson, F. and A. M. Cupples. 2016. Microbial community characterization and functional gene quantification in RDX degrading microcosms derived from sediment and groundwater at two Naval sites. Applied Microbiology and Biotechnology, 100: 7297-7309.
Kanitkar, Y. H., Stedtfeld, R. D., Steffan, R. J., Hashsham, S. A. and A. M. Cupples. 2016. Development of loop mediated isothermal amplification (LAMP) for rapid detection and quantification of Dehalococcoides spp. biomarker genes in commercial reductive dechlorinating cultures KB-1 and SDC-9. Applied and Environmental Microbiology.82:1799-1806.
Seyrig, G., Stedtfeld, R. D., Tourlousse, D. M., Farhan, A., Towery, K., Cupples, A. M, Tiedje, J. M. and S. A. Hashsham. 2015. Selection of fluorescent DNA dyes for real-time LAMP with portable and simple optics. Journal of Microbiological Methods. 119: 223-227.
Paes, F., Liu, X., Mattes, T. E. and A. M. Cupples. 2015. Elucidating carbon uptake from vinyl chloride using stable isotope probing and Illumina sequencing. Applied Microbiology and Biotechnology. 99: 7735-7743.
Jayamani, I. and A. M Cupples. 2015. Stable isotope probing reveals the importance of Comamonas and Pseudomonadaceae in RDX degradation in samples from a Navy detonation site. Environmental Science and Pollution Research. 22: 10340-10350.
Jayamani, I. and A. M. Cupples. 2015. A comparative study of microbial communities in four soil slurries capable of RDX degradation using Illumina sequencing. Biodegradation. 26: 247-257.
Jayamani, I. and A. M. Cupples. 2015. Stable isotope probing and high throughput sequencing implicates Xanthomonadaceae and Rhodocyclaceae in ethylbenzene degradation. Environmental Engineering Science. 32:240-249.
Ding, L. and A. M. Cupples. 2015. The effect of the potential fuel additive isobutanol on benzene, toluene, ethylbenzene, p-xylene degradation in aerobic soil microcosms. Environmental Technology, 36: 237-244.
Song, Y., Xiao, L., Jayamani, I., He, Z. and A.M. Cupples. 2015. A novel method to characterize bacterial communities affected by carbon source and electricity generation in microbial fuel cells using stable isotope probing and Illumina sequencing. Journal of Microbiological Methods, 108:4-11.